Detailed information of SNP:
|
SNP ID:
sf0221807001(Gbrowse)
Chromosome: chr02 Position: 21807001 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1400 | 95.50% | 4.50% |
| All Indica | 798 | 99.87% | 0.13% |
| All Japonica | 481 | 87.53% | 12.47% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 99.73% | 0.27% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 210 | 100.00% | 0.00% |
| Temperate Japonica | 329 | 95.74% | 4.26% |
| Tropical Japonica | 90 | 67.78% | 32.22% |
| Japonica Intermediate | 62 | 72.58% | 27.42% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 95.00% | 5.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0221807001 | G->A | LOC_Os02g36190(LOC_Os02g36190.1) | Synonymous |