Detailed information of SNP:
|
SNP ID:
sf0221811452(Gbrowse)
Chromosome: chr02 Position: 21811452 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1408 | 60.87% | 39.13% |
| All Indica | 789 | 67.30% | 32.70% |
| All Japonica | 496 | 56.65% | 43.35% |
| Aus | 67 | 5.97% | 94.03% |
| Indica I | 371 | 68.19% | 31.81% |
| Indica II | 208 | 64.90% | 35.10% |
| Indica Intermediate | 210 | 68.10% | 31.90% |
| Temperate Japonica | 335 | 43.28% | 56.72% |
| Tropical Japonica | 93 | 82.80% | 17.20% |
| Japonica Intermediate | 68 | 86.76% | 13.24% |
| Group VI/Aromatic | 14 | 85.71% | 14.29% |
| Intermediate | 42 | 69.05% | 30.95% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0221811452 | G->A | INTERGENIC | None |