Detailed information of SNP:
SNP ID:
sf0221841598(Gbrowse)
Chromosome: chr02 Position: 21841598 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
---|---|---|---|
All | 1419 | 75.97% | 24.03% |
All Indica | 799 | 99.37% | 0.63% |
All Japonica | 497 | 38.23% | 61.77% |
Aus | 67 | 100.00% | 0.00% |
Indica I | 375 | 99.73% | 0.27% |
Indica II | 213 | 100.00% | 0.00% |
Indica Intermediate | 211 | 98.10% | 1.90% |
Temperate Japonica | 335 | 47.46% | 52.54% |
Tropical Japonica | 94 | 21.28% | 78.72% |
Japonica Intermediate | 68 | 16.18% | 83.82% |
Group VI/Aromatic | 14 | 14.29% | 85.71% |
Intermediate | 42 | 59.52% | 40.48% |
Allele Var Effect:
SNP ID | Var | Gene | Effect/Location |
---|---|---|---|
sf0221841598 | T->C | LOC_Os02g36210(LOC_Os02g36210.1) | UTR_3_PRIME |