Detailed information of SNP:
|
SNP ID:
sf0221843662(Gbrowse)
Chromosome: chr02 Position: 21843662 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1418 | 77.01% | 22.99% |
| All Indica | 799 | 99.37% | 0.63% |
| All Japonica | 497 | 40.24% | 59.76% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 99.73% | 0.27% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 98.10% | 1.90% |
| Temperate Japonica | 335 | 48.66% | 51.34% |
| Tropical Japonica | 94 | 23.40% | 76.60% |
| Japonica Intermediate | 68 | 22.06% | 77.94% |
| Group VI/Aromatic | 13 | 15.38% | 84.62% |
| Intermediate | 42 | 69.05% | 30.95% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0221843662 | C->T | INTERGENIC | None |