Detailed information of SNP:
|
SNP ID:
sf0221847727(Gbrowse)
Chromosome: chr02 Position: 21847727 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1418 | 96.90% | 3.10% |
| All Indica | 798 | 94.74% | 5.26% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 374 | 100.00% | 0.00% |
| Indica II | 213 | 83.57% | 16.43% |
| Indica Intermediate | 211 | 96.68% | 3.32% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 97.62% | 2.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0221847727 | A->G | LOC_Os02g36220(LOC_Os02g36220.2) | UTR_3_PRIME |
| sf0221847727 | A->G | LOC_Os02g36220(LOC_Os02g36220.1) | UTR_3_PRIME |