Detailed information of SNP:
|
SNP ID:
sf0221853508(Gbrowse)
Chromosome: chr02 Position: 21853508 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1418 | 75.88% | 24.12% |
| All Indica | 799 | 99.37% | 0.63% |
| All Japonica | 496 | 37.90% | 62.10% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 99.73% | 0.27% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 98.10% | 1.90% |
| Temperate Japonica | 334 | 46.71% | 53.29% |
| Tropical Japonica | 94 | 22.34% | 77.66% |
| Japonica Intermediate | 68 | 16.18% | 83.82% |
| Group VI/Aromatic | 14 | 14.29% | 85.71% |
| Intermediate | 42 | 59.52% | 40.48% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0221853508 | A->G | LOC_Os02g36220(LOC_Os02g36220.2) | INTRON |
| sf0221853508 | A->G | LOC_Os02g36220(LOC_Os02g36220.1) | INTRON |