Detailed information of SNP:
|
SNP ID:
sf0221856740(Gbrowse)
Chromosome: chr02 Position: 21856740 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1403 | 88.67% | 11.33% |
| All Indica | 798 | 99.37% | 0.63% |
| All Japonica | 482 | 69.09% | 30.91% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 374 | 99.20% | 0.80% |
| Indica II | 213 | 99.06% | 0.94% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 321 | 56.39% | 43.61% |
| Tropical Japonica | 93 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 86.76% | 13.24% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 90.48% | 9.52% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0221856740 | G->A | LOC_Os02g36220(LOC_Os02g36220.2) | INTRON |
| sf0221856740 | G->A | LOC_Os02g36220(LOC_Os02g36220.1) | INTRON |