Detailed information of SNP:
|
SNP ID:
sf0221860675(Gbrowse)
Chromosome: chr02 Position: 21860675 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1404 | 74.22% | 25.78% |
| All Indica | 799 | 99.37% | 0.63% |
| All Japonica | 482 | 31.95% | 68.05% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 99.73% | 0.27% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 98.10% | 1.90% |
| Temperate Japonica | 328 | 36.59% | 63.41% |
| Tropical Japonica | 90 | 24.44% | 75.56% |
| Japonica Intermediate | 64 | 18.75% | 81.25% |
| Group VI/Aromatic | 14 | 14.29% | 85.71% |
| Intermediate | 42 | 59.52% | 40.48% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0221860675 | C->T | INTERGENIC | None |