Detailed information of SNP:
|
SNP ID:
sf0221864912(Gbrowse)
Chromosome: chr02 Position: 21864912 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1374 | 77.44% | 22.56% |
| All Indica | 798 | 99.50% | 0.50% |
| All Japonica | 456 | 37.28% | 62.72% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 374 | 100.00% | 0.00% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 98.10% | 1.90% |
| Temperate Japonica | 304 | 42.43% | 57.57% |
| Tropical Japonica | 89 | 25.84% | 74.16% |
| Japonica Intermediate | 63 | 28.57% | 71.43% |
| Group VI/Aromatic | 14 | 14.29% | 85.71% |
| Intermediate | 39 | 79.49% | 20.51% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0221864912 | G->A | INTERGENIC | None |