Detailed information of SNP:
|
SNP ID:
sf0221866827(Gbrowse)
Chromosome: chr02 Position: 21866827 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1411 | 74.06% | 25.94% |
| All Indica | 799 | 99.00% | 1.00% |
| All Japonica | 491 | 32.79% | 67.21% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 375 | 99.73% | 0.27% |
| Indica II | 213 | 98.59% | 1.41% |
| Indica Intermediate | 211 | 98.10% | 1.90% |
| Temperate Japonica | 331 | 38.37% | 61.63% |
| Tropical Japonica | 93 | 23.66% | 76.34% |
| Japonica Intermediate | 67 | 17.91% | 82.09% |
| Group VI/Aromatic | 14 | 14.29% | 85.71% |
| Intermediate | 40 | 62.50% | 37.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0221866827 | G->A | INTERGENIC | None |