Detailed information of SNP:
|
SNP ID:
sf0221866856(Gbrowse)
Chromosome: chr02 Position: 21866856 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1406 | 75.11% | 24.89% |
| All Indica | 799 | 99.12% | 0.88% |
| All Japonica | 488 | 34.63% | 65.37% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 375 | 99.73% | 0.27% |
| Indica II | 213 | 99.06% | 0.94% |
| Indica Intermediate | 211 | 98.10% | 1.90% |
| Temperate Japonica | 329 | 40.43% | 59.57% |
| Tropical Japonica | 91 | 25.27% | 74.73% |
| Japonica Intermediate | 68 | 19.12% | 80.88% |
| Group VI/Aromatic | 14 | 14.29% | 85.71% |
| Intermediate | 38 | 71.05% | 28.95% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0221866856 | G->A | INTERGENIC | None |