Detailed information of SNP:
|
SNP ID:
sf0221867769(Gbrowse)
Chromosome: chr02 Position: 21867769 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1410 | 60.35% | 39.65% |
| All Indica | 794 | 93.32% | 6.68% |
| All Japonica | 496 | 4.44% | 95.56% |
| Aus | 66 | 98.48% | 1.52% |
| Indica I | 370 | 92.97% | 7.03% |
| Indica II | 213 | 94.84% | 5.16% |
| Indica Intermediate | 211 | 92.42% | 7.58% |
| Temperate Japonica | 335 | 0.60% | 99.40% |
| Tropical Japonica | 93 | 19.35% | 80.65% |
| Japonica Intermediate | 68 | 2.94% | 97.06% |
| Group VI/Aromatic | 14 | 14.29% | 85.71% |
| Intermediate | 40 | 52.50% | 47.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0221867769 | C->T | INTERGENIC | None |