Detailed information of SNP:
|
SNP ID:
sf0221869712(Gbrowse)
Chromosome: chr02 Position: 21869712 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1416 | 89.62% | 10.38% |
| All Indica | 796 | 98.12% | 1.88% |
| All Japonica | 497 | 74.25% | 25.75% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 373 | 97.86% | 2.14% |
| Indica II | 212 | 98.11% | 1.89% |
| Indica Intermediate | 211 | 98.58% | 1.42% |
| Temperate Japonica | 335 | 64.48% | 35.52% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 88.24% | 11.76% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 92.86% | 7.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0221869712 | T->C | INTERGENIC | None |