Detailed information of SNP:
|
SNP ID:
sf0221876990(Gbrowse)
Chromosome: chr02 Position: 21876990 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1337 | 97.23% | 2.77% |
| All Indica | 798 | 99.75% | 0.25% |
| All Japonica | 419 | 91.89% | 8.11% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 374 | 99.47% | 0.53% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 284 | 89.08% | 10.92% |
| Tropical Japonica | 79 | 100.00% | 0.00% |
| Japonica Intermediate | 56 | 94.64% | 5.36% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 39 | 97.44% | 2.56% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0221876990 | G->A | INTERGENIC | None |