Detailed information of SNP:
|
SNP ID:
sf0221900064(Gbrowse)
Chromosome: chr02 Position: 21900064 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1372 | 97.67% | 2.33% |
| All Indica | 753 | 96.02% | 3.98% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 351 | 100.00% | 0.00% |
| Indica II | 204 | 87.25% | 12.75% |
| Indica Intermediate | 198 | 97.98% | 2.02% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 97.56% | 2.44% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0221900064 | G->A | LOC_Os02g36280(LOC_Os02g36280.1) | Synonymous |