Detailed information of SNP:
|
SNP ID:
sf0221913432(Gbrowse)
Chromosome: chr02 Position: 21913432 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1419 | 89.36% | 10.64% |
| All Indica | 799 | 98.75% | 1.25% |
| All Japonica | 497 | 72.03% | 27.97% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 98.67% | 1.33% |
| Indica II | 213 | 98.12% | 1.88% |
| Indica Intermediate | 211 | 99.53% | 0.47% |
| Temperate Japonica | 335 | 63.58% | 36.42% |
| Tropical Japonica | 94 | 92.55% | 7.45% |
| Japonica Intermediate | 68 | 85.29% | 14.71% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 95.24% | 4.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0221913432 | A->G | INTERGENIC | None |