Detailed information of SNP:
|
SNP ID:
sf0221939254(Gbrowse)
Chromosome: chr02 Position: 21939254 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1416 | 64.62% | 35.38% |
| All Indica | 797 | 45.92% | 54.08% |
| All Japonica | 497 | 96.38% | 3.62% |
| Aus | 67 | 41.79% | 58.21% |
| Indica I | 373 | 31.10% | 68.90% |
| Indica II | 213 | 69.95% | 30.05% |
| Indica Intermediate | 211 | 47.87% | 52.13% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 94 | 84.04% | 15.96% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 68.29% | 31.71% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0221939254 | C->T | INTERGENIC | None |