Detailed information of SNP:
|
SNP ID:
sf0221942164(Gbrowse)
Chromosome: chr02 Position: 21942164 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1419 | 56.52% | 43.48% |
| All Indica | 799 | 89.86% | 10.14% |
| All Japonica | 497 | 4.83% | 95.17% |
| Aus | 67 | 58.21% | 41.79% |
| Indica I | 375 | 92.53% | 7.47% |
| Indica II | 213 | 92.49% | 7.51% |
| Indica Intermediate | 211 | 82.46% | 17.54% |
| Temperate Japonica | 335 | 0.90% | 99.10% |
| Tropical Japonica | 94 | 20.21% | 79.79% |
| Japonica Intermediate | 68 | 2.94% | 97.06% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 50.00% | 50.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0221942164 | C->T | INTERGENIC | None |