Detailed information of SNP:
|
SNP ID:
sf0221947625(Gbrowse)
Chromosome: chr02 Position: 21947625 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1413 | 64.05% | 35.95% |
| All Indica | 795 | 44.78% | 55.22% |
| All Japonica | 496 | 96.77% | 3.23% |
| Aus | 67 | 41.79% | 58.21% |
| Indica I | 375 | 30.40% | 69.60% |
| Indica II | 210 | 69.52% | 30.48% |
| Indica Intermediate | 210 | 45.71% | 54.29% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 93 | 84.95% | 15.05% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 65.85% | 34.15% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0221947625 | C->T | INTERGENIC | None |