Detailed information of SNP:
|
SNP ID:
sf0221951966(Gbrowse)
Chromosome: chr02 Position: 21951966 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1415 | 63.67% | 36.33% |
| All Indica | 796 | 44.35% | 55.65% |
| All Japonica | 496 | 96.57% | 3.43% |
| Aus | 67 | 41.79% | 58.21% |
| Indica I | 374 | 30.21% | 69.79% |
| Indica II | 212 | 68.87% | 31.13% |
| Indica Intermediate | 210 | 44.76% | 55.24% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 93 | 83.87% | 16.13% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 64.29% | 35.71% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0221951966 | C->T | LOC_Os02g36360(LOC_Os02g36360.1) | INTRON |
| sf0221951966 | C->T | LOC_Os02g36360(LOC_Os02g36360.2) | INTRON |
| sf0221951966 | C->T | LOC_Os02g36360(LOC_Os02g36360.3) | INTRON |