Detailed information of SNP:
|
SNP ID:
sf0221962742(Gbrowse)
Chromosome: chr02 Position: 21962742 |
Major allele:
C
Minor allele: A Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1386 | 93.43% | 6.57% |
| All Indica | 773 | 93.14% | 6.86% |
| All Japonica | 497 | 97.18% | 2.82% |
| Aus | 61 | 70.49% | 29.51% |
| Indica I | 356 | 91.57% | 8.43% |
| Indica II | 210 | 97.62% | 2.38% |
| Indica Intermediate | 207 | 91.30% | 8.70% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 85.11% | 14.89% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 85.37% | 14.63% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0221962742 | C->A | LOC_Os02g36370(LOC_Os02g36370.1) | INTRON |