Detailed information of SNP:



SNP ID: sf0221987815(Gbrowse)

Chromosome: chr02

Position: 21987815
Major allele: T

Minor allele: C

Reference allele: C

Allele Frequencies:


NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.


PopulationsPopulation SizeFrequency of T(major allele)Frequency of C(minor allele)
All1413 51.52% 48.48%
All Indica793 77.93% 22.07%
All Japonica497 4.43% 95.57%
Aus67 95.52% 4.48%
Indica I375 75.73% 24.27%
Indica II208 92.79% 7.21%
Indica Intermediate210 67.14% 32.86%
Temperate Japonica335 0.90% 99.10%
Tropical Japonica94 18.09% 81.91%
Japonica Intermediate68 2.94% 97.06%
Group VI/Aromatic14 21.43% 78.57%
Intermediate42 50.00% 50.00%

Allele Var Effect:


SNP ID Var Gene Effect/Location
sf0221987815 C->T INTERGENIC None