Detailed information of SNP:
|
SNP ID:
sf0221987815(Gbrowse)
Chromosome: chr02 Position: 21987815 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1413 | 51.52% | 48.48% |
| All Indica | 793 | 77.93% | 22.07% |
| All Japonica | 497 | 4.43% | 95.57% |
| Aus | 67 | 95.52% | 4.48% |
| Indica I | 375 | 75.73% | 24.27% |
| Indica II | 208 | 92.79% | 7.21% |
| Indica Intermediate | 210 | 67.14% | 32.86% |
| Temperate Japonica | 335 | 0.90% | 99.10% |
| Tropical Japonica | 94 | 18.09% | 81.91% |
| Japonica Intermediate | 68 | 2.94% | 97.06% |
| Group VI/Aromatic | 14 | 21.43% | 78.57% |
| Intermediate | 42 | 50.00% | 50.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0221987815 | C->T | INTERGENIC | None |