Detailed information of SNP:
|
SNP ID:
sf0221988945(Gbrowse)
Chromosome: chr02 Position: 21988945 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1418 | 51.20% | 48.80% |
| All Indica | 798 | 77.32% | 22.68% |
| All Japonica | 497 | 4.43% | 95.57% |
| Aus | 67 | 95.52% | 4.48% |
| Indica I | 374 | 74.87% | 25.13% |
| Indica II | 213 | 92.49% | 7.51% |
| Indica Intermediate | 211 | 66.35% | 33.65% |
| Temperate Japonica | 335 | 0.60% | 99.40% |
| Tropical Japonica | 94 | 19.15% | 80.85% |
| Japonica Intermediate | 68 | 2.94% | 97.06% |
| Group VI/Aromatic | 14 | 14.29% | 85.71% |
| Intermediate | 42 | 50.00% | 50.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0221988945 | G->A | INTERGENIC | None |