Detailed information of SNP:
|
SNP ID:
sf0221996262(Gbrowse)
Chromosome: chr02 Position: 21996262 |
Major allele:
G
Minor allele: T Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1178 | 96.94% | 3.06% |
| All Indica | 783 | 100.00% | 0.00% |
| All Japonica | 279 | 87.46% | 12.54% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 371 | 100.00% | 0.00% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 199 | 100.00% | 0.00% |
| Temperate Japonica | 177 | 92.09% | 7.91% |
| Tropical Japonica | 68 | 80.88% | 19.12% |
| Japonica Intermediate | 34 | 76.47% | 23.53% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 35 | 97.14% | 2.86% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0221996262 | G->T | LOC_Os02g36414(LOC_Os02g36414.1) | Synonymous |