Detailed information of SNP:
|
SNP ID:
sf0221996492(Gbrowse)
Chromosome: chr02 Position: 21996492 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1418 | 57.26% | 42.74% |
| All Indica | 799 | 91.24% | 8.76% |
| All Japonica | 496 | 4.44% | 95.56% |
| Aus | 67 | 58.21% | 41.79% |
| Indica I | 375 | 92.80% | 7.20% |
| Indica II | 213 | 96.24% | 3.76% |
| Indica Intermediate | 211 | 83.41% | 16.59% |
| Temperate Japonica | 335 | 0.60% | 99.40% |
| Tropical Japonica | 93 | 19.35% | 80.65% |
| Japonica Intermediate | 68 | 2.94% | 97.06% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 50.00% | 50.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0221996492 | G->A | LOC_Os02g36414(LOC_Os02g36414.1) | UTR_3_PRIME |