Detailed information of SNP:
|
SNP ID:
sf0221999114(Gbrowse)
Chromosome: chr02 Position: 21999114 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1419 | 53.35% | 46.65% |
| All Indica | 799 | 30.66% | 69.34% |
| All Japonica | 497 | 95.77% | 4.23% |
| Aus | 67 | 4.48% | 95.52% |
| Indica I | 375 | 43.47% | 56.53% |
| Indica II | 213 | 5.63% | 94.37% |
| Indica Intermediate | 211 | 33.18% | 66.82% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 94 | 81.91% | 18.09% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 14 | 85.71% | 14.29% |
| Intermediate | 42 | 50.00% | 50.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0221999114 | A->G | INTERGENIC | None |