Detailed information of SNP:
|
SNP ID:
sf0222011779(Gbrowse)
Chromosome: chr02 Position: 22011779 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1419 | 59.90% | 40.10% |
| All Indica | 799 | 92.62% | 7.38% |
| All Japonica | 497 | 4.43% | 95.57% |
| Aus | 67 | 95.52% | 4.48% |
| Indica I | 375 | 96.27% | 3.73% |
| Indica II | 213 | 96.71% | 3.29% |
| Indica Intermediate | 211 | 81.99% | 18.01% |
| Temperate Japonica | 335 | 0.60% | 99.40% |
| Tropical Japonica | 94 | 19.15% | 80.85% |
| Japonica Intermediate | 68 | 2.94% | 97.06% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 54.76% | 45.24% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0222011779 | T->C | INTERGENIC | None |