Detailed information of SNP:
|
SNP ID:
sf0222013421(Gbrowse)
Chromosome: chr02 Position: 22013421 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1394 | 50.86% | 49.14% |
| All Indica | 776 | 24.87% | 75.13% |
| All Japonica | 497 | 95.77% | 4.23% |
| Aus | 66 | 7.58% | 92.42% |
| Indica I | 363 | 30.03% | 69.97% |
| Indica II | 207 | 9.18% | 90.82% |
| Indica Intermediate | 206 | 31.55% | 68.45% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 94 | 81.91% | 18.09% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 14 | 85.71% | 14.29% |
| Intermediate | 41 | 56.10% | 43.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0222013421 | C->T | INTERGENIC | None |