Detailed information of SNP:
|
SNP ID:
sf0222013626(Gbrowse)
Chromosome: chr02 Position: 22013626 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1418 | 59.66% | 40.34% |
| All Indica | 799 | 91.74% | 8.26% |
| All Japonica | 496 | 4.84% | 95.16% |
| Aus | 67 | 94.03% | 5.97% |
| Indica I | 375 | 93.87% | 6.13% |
| Indica II | 213 | 97.18% | 2.82% |
| Indica Intermediate | 211 | 82.46% | 17.54% |
| Temperate Japonica | 335 | 1.19% | 98.81% |
| Tropical Japonica | 93 | 18.28% | 81.72% |
| Japonica Intermediate | 68 | 4.41% | 95.59% |
| Group VI/Aromatic | 14 | 14.29% | 85.71% |
| Intermediate | 42 | 57.14% | 42.86% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0222013626 | T->C | INTERGENIC | None |