Detailed information of SNP:
|
SNP ID:
sf0222014023(Gbrowse)
Chromosome: chr02 Position: 22014023 |
Major allele:
A
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1419 | 58.56% | 41.44% |
| All Indica | 799 | 90.74% | 9.26% |
| All Japonica | 497 | 4.43% | 95.57% |
| Aus | 67 | 89.55% | 10.45% |
| Indica I | 375 | 94.67% | 5.33% |
| Indica II | 213 | 95.31% | 4.69% |
| Indica Intermediate | 211 | 79.15% | 20.85% |
| Temperate Japonica | 335 | 0.60% | 99.40% |
| Tropical Japonica | 94 | 19.15% | 80.85% |
| Japonica Intermediate | 68 | 2.94% | 97.06% |
| Group VI/Aromatic | 14 | 14.29% | 85.71% |
| Intermediate | 42 | 52.38% | 47.62% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0222014023 | C->A | INTERGENIC | None |