Detailed information of SNP:
|
SNP ID:
sf0222016038(Gbrowse)
Chromosome: chr02 Position: 22016038 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1416 | 59.60% | 40.40% |
| All Indica | 798 | 91.98% | 8.02% |
| All Japonica | 496 | 4.64% | 95.36% |
| Aus | 67 | 92.54% | 7.46% |
| Indica I | 374 | 95.72% | 4.28% |
| Indica II | 213 | 98.59% | 1.41% |
| Indica Intermediate | 211 | 78.67% | 21.33% |
| Temperate Japonica | 335 | 0.60% | 99.40% |
| Tropical Japonica | 93 | 19.35% | 80.65% |
| Japonica Intermediate | 68 | 4.41% | 95.59% |
| Group VI/Aromatic | 14 | 14.29% | 85.71% |
| Intermediate | 41 | 56.10% | 43.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0222016038 | T->C | INTERGENIC | None |