Detailed information of SNP:
|
SNP ID:
sf0222016712(Gbrowse)
Chromosome: chr02 Position: 22016712 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1415 | 88.83% | 11.17% |
| All Indica | 795 | 83.52% | 16.48% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 67 | 65.67% | 34.33% |
| Indica I | 371 | 76.01% | 23.99% |
| Indica II | 213 | 92.02% | 7.98% |
| Indica Intermediate | 211 | 88.15% | 11.85% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 95.24% | 4.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0222016712 | C->T | INTERGENIC | None |