Detailed information of SNP:
|
SNP ID:
sf0222017780(Gbrowse)
Chromosome: chr02 Position: 22017780 |
Major allele:
C
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1416 | 59.32% | 40.68% |
| All Indica | 796 | 91.96% | 8.04% |
| All Japonica | 497 | 4.43% | 95.57% |
| Aus | 67 | 89.55% | 10.45% |
| Indica I | 373 | 94.37% | 5.63% |
| Indica II | 213 | 97.18% | 2.82% |
| Indica Intermediate | 210 | 82.38% | 17.62% |
| Temperate Japonica | 335 | 0.60% | 99.40% |
| Tropical Japonica | 94 | 19.15% | 80.85% |
| Japonica Intermediate | 68 | 2.94% | 97.06% |
| Group VI/Aromatic | 14 | 14.29% | 85.71% |
| Intermediate | 42 | 57.14% | 42.86% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0222017780 | A->C | INTERGENIC | None |