Detailed information of SNP:
|
SNP ID:
sf0222027526(Gbrowse)
Chromosome: chr02 Position: 22027526 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1415 | 60.92% | 39.08% |
| All Indica | 799 | 91.61% | 8.39% |
| All Japonica | 493 | 8.52% | 91.48% |
| Aus | 67 | 94.03% | 5.97% |
| Indica I | 375 | 94.40% | 5.60% |
| Indica II | 213 | 96.71% | 3.29% |
| Indica Intermediate | 211 | 81.52% | 18.48% |
| Temperate Japonica | 332 | 6.93% | 93.07% |
| Tropical Japonica | 94 | 18.09% | 81.91% |
| Japonica Intermediate | 67 | 2.99% | 97.01% |
| Group VI/Aromatic | 14 | 14.29% | 85.71% |
| Intermediate | 42 | 54.76% | 45.24% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0222027526 | C->T | LOC_Os02g36480(LOC_Os02g36480.1) | Synonymous |