Detailed information of SNP:
|
SNP ID:
sf0222028784(Gbrowse)
Chromosome: chr02 Position: 22028784 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1414 | 53.61% | 46.39% |
| All Indica | 794 | 83.38% | 16.62% |
| All Japonica | 497 | 3.22% | 96.78% |
| Aus | 67 | 86.57% | 13.43% |
| Indica I | 371 | 84.64% | 15.36% |
| Indica II | 212 | 91.98% | 8.02% |
| Indica Intermediate | 211 | 72.51% | 27.49% |
| Temperate Japonica | 335 | 0.30% | 99.70% |
| Tropical Japonica | 94 | 14.89% | 85.11% |
| Japonica Intermediate | 68 | 1.47% | 98.53% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 50.00% | 50.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0222028784 | G->A | INTERGENIC | None |