Detailed information of SNP:
|
SNP ID:
sf0222030389(Gbrowse)
Chromosome: chr02 Position: 22030389 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1416 | 53.04% | 46.96% |
| All Indica | 796 | 26.26% | 73.74% |
| All Japonica | 497 | 95.98% | 4.02% |
| Aus | 67 | 43.28% | 56.72% |
| Indica I | 374 | 30.75% | 69.25% |
| Indica II | 212 | 13.68% | 86.32% |
| Indica Intermediate | 210 | 30.95% | 69.05% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 94 | 82.98% | 17.02% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 54.76% | 45.24% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0222030389 | G->A | INTERGENIC | None |