Detailed information of SNP:
|
SNP ID:
sf0222031134(Gbrowse)
Chromosome: chr02 Position: 22031134 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1280 | 67.66% | 32.34% |
| All Indica | 673 | 48.89% | 51.11% |
| All Japonica | 494 | 97.57% | 2.43% |
| Aus | 61 | 27.87% | 72.13% |
| Indica I | 308 | 46.75% | 53.25% |
| Indica II | 183 | 37.16% | 62.84% |
| Indica Intermediate | 182 | 64.29% | 35.71% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 91 | 90.11% | 9.89% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 14 | 85.71% | 14.29% |
| Intermediate | 38 | 68.42% | 31.58% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0222031134 | A->G | INTERGENIC | None |