Detailed information of SNP:
|
SNP ID:
sf0222035160(Gbrowse)
Chromosome: chr02 Position: 22035160 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1366 | 86.38% | 13.62% |
| All Indica | 750 | 76.53% | 23.47% |
| All Japonica | 496 | 99.40% | 0.60% |
| Aus | 64 | 98.44% | 1.56% |
| Indica I | 343 | 88.05% | 11.95% |
| Indica II | 206 | 50.00% | 50.00% |
| Indica Intermediate | 201 | 84.08% | 15.92% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 93 | 98.92% | 1.08% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 85.71% | 14.29% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0222035160 | A->G | LOC_Os02g36490(LOC_Os02g36490.2) | INTRON |
| sf0222035160 | A->G | LOC_Os02g36490(LOC_Os02g36490.3) | INTRON |
| sf0222035160 | A->G | LOC_Os02g36490(LOC_Os02g36490.1) | INTRON |