Detailed information of SNP:
|
SNP ID:
sf0222037091(Gbrowse)
Chromosome: chr02 Position: 22037091 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1413 | 52.87% | 47.13% |
| All Indica | 793 | 25.73% | 74.27% |
| All Japonica | 497 | 95.98% | 4.02% |
| Aus | 67 | 41.79% | 58.21% |
| Indica I | 370 | 29.46% | 70.54% |
| Indica II | 213 | 13.62% | 86.38% |
| Indica Intermediate | 210 | 31.43% | 68.57% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 94 | 82.98% | 17.02% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 59.52% | 40.48% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0222037091 | C->T | INTERGENIC | None |