Detailed information of SNP:
|
SNP ID:
sf0222046291(Gbrowse)
Chromosome: chr02 Position: 22046291 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1417 | 60.20% | 39.80% |
| All Indica | 797 | 92.22% | 7.78% |
| All Japonica | 497 | 4.63% | 95.37% |
| Aus | 67 | 95.52% | 4.48% |
| Indica I | 373 | 93.30% | 6.70% |
| Indica II | 213 | 97.65% | 2.35% |
| Indica Intermediate | 211 | 84.83% | 15.17% |
| Temperate Japonica | 335 | 0.90% | 99.10% |
| Tropical Japonica | 94 | 19.15% | 80.85% |
| Japonica Intermediate | 68 | 2.94% | 97.06% |
| Group VI/Aromatic | 14 | 14.29% | 85.71% |
| Intermediate | 42 | 69.05% | 30.95% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0222046291 | T->C | INTERGENIC | None |