Detailed information of SNP:
|
SNP ID:
sf0222054550(Gbrowse)
Chromosome: chr02 Position: 22054550 |
Major allele:
G
Minor allele: T Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1419 | 52.15% | 47.85% |
| All Indica | 799 | 25.41% | 74.59% |
| All Japonica | 497 | 95.37% | 4.63% |
| Aus | 67 | 43.28% | 56.72% |
| Indica I | 375 | 33.33% | 66.67% |
| Indica II | 213 | 9.39% | 90.61% |
| Indica Intermediate | 211 | 27.49% | 72.51% |
| Temperate Japonica | 335 | 98.81% | 1.19% |
| Tropical Japonica | 94 | 81.91% | 18.09% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 50.00% | 50.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0222054550 | G->T | INTERGENIC | None |