Detailed information of SNP:
|
SNP ID:
sf0222054713(Gbrowse)
Chromosome: chr02 Position: 22054713 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1419 | 51.59% | 48.41% |
| All Indica | 799 | 77.10% | 22.90% |
| All Japonica | 497 | 4.63% | 95.37% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 375 | 69.60% | 30.40% |
| Indica II | 213 | 93.90% | 6.10% |
| Indica Intermediate | 211 | 73.46% | 26.54% |
| Temperate Japonica | 335 | 0.90% | 99.10% |
| Tropical Japonica | 94 | 19.15% | 80.85% |
| Japonica Intermediate | 68 | 2.94% | 97.06% |
| Group VI/Aromatic | 14 | 14.29% | 85.71% |
| Intermediate | 42 | 59.52% | 40.48% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0222054713 | G->A | INTERGENIC | None |