Detailed information of SNP:
|
SNP ID:
sf0222060061(Gbrowse)
Chromosome: chr02 Position: 22060061 |
Major allele:
T
Minor allele: A Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1268 | 75.24% | 24.76% |
| All Indica | 683 | 62.08% | 37.92% |
| All Japonica | 484 | 94.42% | 5.58% |
| Aus | 51 | 52.94% | 47.06% |
| Indica I | 344 | 61.34% | 38.66% |
| Indica II | 155 | 69.68% | 30.32% |
| Indica Intermediate | 184 | 57.07% | 42.93% |
| Temperate Japonica | 335 | 93.73% | 6.27% |
| Tropical Japonica | 82 | 95.12% | 4.88% |
| Japonica Intermediate | 67 | 97.01% | 2.99% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 36 | 91.67% | 8.33% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0222060061 | T->A | LOC_Os02g36540(LOC_Os02g36540.1) | INTRON |