Detailed information of SNP:
|
SNP ID:
sf0222115322(Gbrowse)
Chromosome: chr02 Position: 22115322 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1402 | 84.02% | 15.98% |
| All Indica | 785 | 78.73% | 21.27% |
| All Japonica | 496 | 99.80% | 0.20% |
| Aus | 66 | 37.88% | 62.12% |
| Indica I | 370 | 87.84% | 12.16% |
| Indica II | 209 | 74.64% | 25.36% |
| Indica Intermediate | 206 | 66.50% | 33.50% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 67 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 28.57% | 71.43% |
| Intermediate | 41 | 87.80% | 12.20% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0222115322 | C->T | INTERGENIC | None |