Detailed information of SNP:
|
SNP ID:
sf0222139691(Gbrowse)
Chromosome: chr02 Position: 22139691 |
Major allele:
A
Minor allele: T Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1354 | 90.32% | 9.68% |
| All Indica | 797 | 94.10% | 5.90% |
| All Japonica | 437 | 86.96% | 13.04% |
| Aus | 67 | 67.16% | 32.84% |
| Indica I | 374 | 90.37% | 9.63% |
| Indica II | 213 | 99.06% | 0.94% |
| Indica Intermediate | 210 | 95.71% | 4.29% |
| Temperate Japonica | 327 | 91.44% | 8.56% |
| Tropical Japonica | 49 | 42.86% | 57.14% |
| Japonica Intermediate | 61 | 98.36% | 1.64% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 39 | 87.18% | 12.82% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0222139691 | A->T | INTERGENIC | None |