Detailed information of SNP:
|
SNP ID:
sf0222154255(Gbrowse)
Chromosome: chr02 Position: 22154255 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1343 | 92.03% | 7.97% |
| All Indica | 797 | 99.62% | 0.38% |
| All Japonica | 424 | 75.71% | 24.29% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 373 | 99.20% | 0.80% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 266 | 62.78% | 37.22% |
| Tropical Japonica | 93 | 98.92% | 1.08% |
| Japonica Intermediate | 65 | 95.38% | 4.62% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 97.56% | 2.44% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0222154255 | T->C | INTERGENIC | None |