Detailed information of SNP:
|
SNP ID:
sf0222164795(Gbrowse)
Chromosome: chr02 Position: 22164795 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1390 | 54.10% | 45.90% |
| All Indica | 775 | 25.29% | 74.71% |
| All Japonica | 496 | 98.39% | 1.61% |
| Aus | 65 | 63.08% | 36.92% |
| Indica I | 365 | 28.22% | 71.78% |
| Indica II | 207 | 12.56% | 87.44% |
| Indica Intermediate | 203 | 33.00% | 67.00% |
| Temperate Japonica | 335 | 98.81% | 1.19% |
| Tropical Japonica | 93 | 97.85% | 2.15% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 13 | 46.15% | 53.85% |
| Intermediate | 41 | 51.22% | 48.78% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0222164795 | G->A | INTERGENIC | None |