Detailed information of SNP:
|
SNP ID:
sf0222191041(Gbrowse)
Chromosome: chr02 Position: 22191041 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1381 | 86.31% | 13.69% |
| All Indica | 771 | 79.38% | 20.62% |
| All Japonica | 496 | 99.60% | 0.40% |
| Aus | 60 | 71.67% | 28.33% |
| Indica I | 365 | 82.47% | 17.53% |
| Indica II | 199 | 78.89% | 21.11% |
| Indica Intermediate | 207 | 74.40% | 25.60% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 93 | 97.85% | 2.15% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 71.43% | 28.57% |
| Intermediate | 40 | 82.50% | 17.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0222191041 | G->A | LOC_Os02g36800(LOC_Os02g36800.1) | Non-Synonymous SNP |