Detailed information of SNP:
|
SNP ID:
sf0222195357(Gbrowse)
Chromosome: chr02 Position: 22195357 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1417 | 96.68% | 3.32% |
| All Indica | 798 | 96.87% | 3.13% |
| All Japonica | 497 | 98.39% | 1.61% |
| Aus | 66 | 83.33% | 16.67% |
| Indica I | 375 | 94.40% | 5.60% |
| Indica II | 213 | 99.53% | 0.47% |
| Indica Intermediate | 210 | 98.57% | 1.43% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 91.49% | 8.51% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 95.24% | 4.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0222195357 | C->T | INTERGENIC | None |