Detailed information of SNP:
|
SNP ID:
sf0222203698(Gbrowse)
Chromosome: chr02 Position: 22203698 |
Major allele:
C
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1407 | 59.06% | 40.94% |
| All Indica | 790 | 92.41% | 7.59% |
| All Japonica | 497 | 3.82% | 96.18% |
| Aus | 64 | 81.25% | 18.75% |
| Indica I | 375 | 94.67% | 5.33% |
| Indica II | 208 | 94.23% | 5.77% |
| Indica Intermediate | 207 | 86.47% | 13.53% |
| Temperate Japonica | 335 | 0.90% | 99.10% |
| Tropical Japonica | 94 | 14.89% | 85.11% |
| Japonica Intermediate | 68 | 2.94% | 97.06% |
| Group VI/Aromatic | 14 | 64.29% | 35.71% |
| Intermediate | 42 | 50.00% | 50.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0222203698 | G->C | INTERGENIC | None |